TERRA-REF Documentation
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Primary version
Primary version
  • Introduction
  • Scientific Objectives
  • Experimental Design
    • The Maricopa Agricultural Center (MAC)
    • Controlled Environment Phenotyping
    • Genomics
  • Data
    • How to Access Data
    • Data Products
      • Environmental conditions
      • Phenotype Data
      • Genomics data
      • Fluorescence intensity imaging
      • Geospatial information
      • Hyperspectral imaging data
      • Infrared heat imaging data
      • Meteorological data
      • Point Cloud Data
      • Controlled Environment phenotype data
    • Data Use Policy
    • Manuscripts and Authorship Guidelines
  • Protocols
    • Field Scanner
    • Sensor Calibration
    • Hyperspectral Data
    • Controlled Environment Protocols
    • Manual Field Data Protocols
    • Phenotractor Protocols
    • UAV Protocols
    • Genomic Protocols
  • Technical Documentation
    • Software
    • Data Standards
      • Existing Data Standards
      • Agronomic and Phenotype Data Standards
      • Genomic Data Standards
      • Sensor Data Standards
      • Data Standards Committee
    • Data Product Levels
    • Directory Structure
    • Data Transfer
    • Data Processing Pipeline
    • Time Series Data in Geostreams
    • Data Backup
    • Systems Configuration
  • Code of Conduct
  • Appendix
    • Glossary
    • Accessing BETYdb with GIS Software
  • References
  • Archived Documentation
    • Developer Manual
      • Submitting data to Clowder
      • Submitting data to BETYdb
      • Submitting Data to CoGe
      • Developing Clowder Extractors
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  • Public Domain Data
  • Citing TERRA REF data:
  • Software and Algorithms
  • Unpublished Data
  • Timing of Future Data Releases
  • Contacts
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  1. Data

Data Use Policy

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Last updated 4 years ago

Public Domain Data

Data will be released with a CC0 license, meaning that they are in the public domain. The CC0 license allows wide use of these data and while it does not legally bind users to acknowledge the source data users are expected cite our data and research in publications, presentations, and other products.

The first release in 2020 included data from Seasons 4 and 6. This is available on and .

Data are in the public domain to enable broad and unrestricted re-use. However, any derived pubications should cite the dataset:

Citing TERRA REF data:

Genomics, sensor, and phenotype data: LeBauer, David et al. (2020), Data From: TERRA-REF, An open reference data set from high resolution genomics, phenomics, and imaging sensors, Dryad, Dataset,

AZMet Weather Data (available on Dryad): Brown, P. W., and B. Russell. 1996. “AZMET, the Arizona Meteorological Network. Arizona Cooperative Extension.” .

Data Processing Pipeline: Burnette, Maxwell, et al. "TERRA-REF data processing infrastructure." Proceedings of the Practice and Experience on Advanced Research Computing. 2018. 1-7.

Software and Algorithms

For algorithms, we intend to release via BSD 3 clause or MIT / BSD compatible license. Algorithms are available on GitHub in the terraref organization: and have been archived on Zenodo (see ).

Citations for Individual Software and Documentation Components are listed in the section and can be browsed on .

Unpublished Data

We plan to make data from the Transportation Energy Resources from Renewable Agriculture Phenotyping Reference Platform (TERRA-REF) project available for use with attribution.

Please consider engaging with team members to collaborate on new research with these data. You can learn more about our approach to co-authorship and also about planned research papers in the section .

Timing of Future Data Releases

Planned future releases include Sorghum Season 9, data from experiments at Kansas State University, and data from the Danforth Indoor Phenotyping Facility.

Additional seasons can be requested as needed. We can provide the raw data and software required to process it. We can also collaborate with you to process the data, but this will typically require new funding sources.

Contacts

  • Todd Mockler, Project/Genomics Lead (email: tmockler@danforthcenter.org)

  • David LeBauer, Computing Pipeline Lead (email: dlebauer@arizona.edu)

  • Nadia Shakoor, Project Director (email: nshakoor@danforthcenter.org)

Any access to data prior to publication is granted with the understanding that the contributions and interests of the TERRA-REF team should be recognized and respected by the users of the data. The TERRA-REF team reserves the right to analyze and published its own data. Resource users should appropriately cite the source of the data and acknowledge the resource produces. The publication of the data, as suggested in the , should specify the collaborative nature of the project, and authorship is expected to include all those TERRA-REF team members contributing significantly to the work.

See also in the Introduction.

TERRA-REF Authorship Guidelines
Dryad
Globus
https://doi.org/10.5061/dryad.4b8gtht99
https://cals.arizona.edu/AZMET/
doi:10.1145/3219104.3219152
github.com/terraref
https://zenodo.org/search?q=terraref
Zenodo
Manuscripts and Authorship Guidelines
Contact Information
references