Data Processing Pipeline

Maricopa Agricultural Center, Arizona

Automated controlled-environment phenotyping, Missouri

At two points in the processing pipeline, metadata derived from collected data is inserted into BETYdb:
  • At the start of the transfer process, metadata collected and derived during Danforth's initial processing will be pushed.
  • After transfer to NCSA, extractors running in Clowder will derive further metadata that will be pushed. This is a subset of the metadata that will also be stored in Clowder's database. The complete metadata definitions are still being determined, but will likely include:
    • plant identifiers
    • experiment and experimenter
    • plant age, date, growth medium, and treatment
    • camera metadata

Kansas State University

HudsonAlpha - Genomics