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References

LeBauer, D.S., Burnette, M.A., Demieville, J., Fahlgren, N., French, A.N., Garnett, R., Hu, Z., Huynh, K., Kooper, R., Li, Z., Maimaitijiang, M., Mao, J., Mockler, T.C., Morris, G.P., Newcomb, M., Ottman, M., Ozersky, P., Paheding, S., Pauli, D., Pless, R., Qin, W., Riemer, K., Rohde, G.S., Rooney, W.L., Sagan, V., Shakoor, N., Stylianou, A., Thorp, K., Ward, R., White, J.W., Willis, C., and Zender C.S. (2020). TERRA-REF, An Open Reference Data Set From High Resolution Genomics, Phenomics, and Imaging Sensors. Dryad Digital Repository. http://doi.org/10.5061/dryad.4b8gtht99​
AZMet Weather Data available on Dryad should be cited as
Brown, P. W., and B. Russell. 1996. “AZMET, the Arizona Meteorological Network. Arizona Cooperative Extension.” https://cals.arizona.edu/AZMET/.

Burnette, Max, David LeBauer, Solmaz Hajmohammadi, Zongyang Li, Craig Willis, Wei Qin, Patrick, and JD Maloney. 2019. terraref/extractors-multispectral: Season 6 Data Publication (2019) (version S6_Pub_2019). Zenodo. https://doi.org/10.5281/zenodo.3406311.
Burnette, Max, David LeBauer, Zongyang Li, Wei Qin, Solmaz Hajmohammadi, Craig Willis, Sidke Paheding, and Nick Heyek. 2019. terraref/extractors-stereo-rgb: Season 6 Data Publication (2019) (version S6_Pub_2019). Zenodo. https://doi.org/10.5281/zenodo.3406304.
Burnette, Max, David LeBauer, Wei Qin, and Yan Liu. 2019. terraref/extractors-metadata: Season 6 Data Publication (2019) (version S6_Pub_2019). Zenodo. https://doi.org/10.5281/zenodo.3406329.
Burnette, Max, Jerome Mao, David LeBauer, Charlie Zender, and Harsh Agrawal. 2019. terraref/extractors-environmental: Season 6 Data Publication (2019) (version S6_Pub_2019). Zenodo. https://doi.org/10.5281/zenodo.3406318.
Burnette, Maxwell, Gareth S. Rohde, Noah Fahlgren, Vasit Sagan, Paheding Sidike, Rob Kooper, Jeffrey A. Terstriep, et al. 2018. “TERRA-REF data processing infrastructure.” In ACM International Conference Proceeding Series. https://doi.org/10.1145/3219104.3219152.
Burnette, Max, Craig Willis, Chris Schnaufer, David LeBauer, Nick Heyek, Wei Qin, Solmaz Hajmohammadi, and Kristina Riemer. 2019. terraref/terrautils: Season 6 Data Publication (2019) (version S6_Pub_2019). Zenodo. https://doi.org/10.5281/zenodo.3406335.
Burnette, Max, Charlie Zender, JeromeMao, David LeBauer, Rachel Shekar, Noah Fahlgren, Craig Willis, et al. 2020. terraref/computing-pipeline: Season 4 & 6 Data Publication (2019) (version S46_Pub_2019). Zenodo. https://doi.org/10.5281/zenodo.3635849.
Burnette, Max, ZongyangLi, Solmaz Hajmohammadi, David LeBauer, Nick Heyek, and Craig Willis. 2019. terraref/extractors-3dscanner: Season 6 Data Publication (2019) (version S6_Pub_2019). Zenodo. https://doi.org/10.5281/zenodo.3406332.
Chamberlain, Scott, Zachary Foster, Ignasi Bartomeus, David LeBauer, Chris Black, and David Harris. 2019. Traits: Species Trait Data from Around the Web. https://CRAN.R-project.org/package=traits.
LeBauer, David, Nick Heyek, Rachel Shekar, Katrin Leinweber, JD Maloney, and Tino Dornbusch. 2020. terraref/reference-data: Season 4 & 6 Data Publication (2019) (version S46_Pub_2019). Zenodo. https://doi.org/10.5281/zenodo.3635863.
LeBauer, David, Craig Willis, Rachel Shekar, Max Burnette, Ting Li, Scott Rohde, Yan Liu, et al. 2020. terraref/documentation: Season 6 Data Publication (2019) (version v0.9). Zenodo. https://doi.org/10.5281/zenodo.3661373.
Mao, Jerome, Max Burnette, Henry Butowsky, Charlie Zender, David LeBauer, and Sidke Paheding. 2019. terraref/extractors-hyperspectral: Season 6 Data Publication (2019) (version S6_Pub_2019). Zenodo. https://doi.org/10.5281/zenodo.3406312.
Marini, Luigi, Rob Kooper, Indira Gutierrez, Constantinos Sophocleous, Max Burnette, Todd Nicholson, Michal Ondrejcek, et al. 2019. Clowder: Open Source Data Management for Long Tail Data (version v1.7.1). Zenodo. https://doi.org/10.5281/zenodo.3300953.
Rohde, Scott, Carl Crott, Patrick Mulroony, Jeremy Kemball, David LeBauer, Rob Kooper, Jimmy Chen, et al. 2016. Bety: BETYdb 4.6. Zenodo. https://doi.org/10.5281/zenodo.48661.
Selby, Peter, Rafael Abbeloos, Jan Erik Backlund, Martin Basterrechea Salido, Guillaume Bauchet, Omar E Benites-Alfaro, Clay Birkett, et al. 2019. “BrAPI—an application programming interface for plant breeding applications.” Bioinformatics 35 (20): 4147–55. https://doi.org/10.1093/bioinformatics/btz190.
Willis, Craig, David LeBauer, Max Burnette, and Rachel Shekar. 2020. terraref/sensor-metadata: Season 4 & 6 Data Publication (2019) (version S46_Pub_2019). Zenodo. https://doi.org/10.5281/zenodo.3635853.

Brenton, Zachary W., Elizabeth A. Cooper, Mathew T. Myers, Richard E. Boyles, Nadia Shakoor, Kelsey J. Zielinski, Bradley L. Rauh, William C. Bridges, Geoffrey P. Morris, and Stephen Kresovich. 2016. “A genomic resource for the development, improvement, and exploitation of sorghum for bioenergy.” Genetics. https://doi.org/10.1534/genetics.115.183947.

Babaeian, Ebrahim, Juan R. Gonzalez-Cena, Mohammad Gohardoust, Xiaobo Hou, Scott A. White, and Markus Tuller. 2020. “Physicochemical and Hydrologic Characterization Terra-Ref South Field.” In Prep.

Morris, Geoffrey P., Davina H. Rhodes, Zachary Brenton, Punna Ramu, Vinayan Madhumal Thayil, Santosh Deshpande, C. Thomas Hash et al. "Dissecting genome-wide association signals for loss-of-function phenotypes in sorghum flavonoid pigmentation traits." G3: Genes, Genomes, Genetics 3, no. 11 (2013): 2085-2094. https://doi.org/10.1534/g3.113.008417​

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Apan, Armando; Held, Alex; Phinn, Stuart; Markley, John Formulation and assessment of narrow-band vegetation indices from EO-1 hyperion imagery for discriminating sugarcane disease 2003 2003 Spatial Sciences Institute Conference: Spatial Knowledge Without Boundaries (SSC2003)
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Carter, Gregory A.; Cibula, William G.; Miller, Richard L. Narrow-band Reflectance Imagery Compared with ThermalImagery for Early Detection of Plant Stress 1996 Journal of Plant Physiology
Chappelle, E.W.; Kim, M.S.; McMurtrey, J.E. Ratio analysis of reflectance spectra (RARS): an algorithm for the remote estimation of the concentrations of chlorophyll a, chlorophyll b, and carotenoids in soybean leaves 1992 Remote Sensing of Environment
Chen, J.M. Evaluation of vegetation indices and a modified simple ratio for boreal applications 1996 Canadian Journal of Remote Sensing
Daughtry, C. S. T.; Walthall, C. L.; Kim, M. S.; de Colstoun, E. Brown; McMurtrey Iii, J. E. Estimating Corn Leaf Chlorophyll Concentration from Leaf and Canopy Reflectance 2000 Remote Sensing of Environment
Daughtry, C.; Hunt, E. R.; Walthall, C. L.; Gish, T. J.; Liang, Shunlin; Kramer, E.J. Assessing the Spatial Distribution of Plant Litter 2001 Proceedings of the Tenth JPL Airborne Earth Science Workshop
Dobrowski, S. Z., Pushnik, J. C., Zarco-Tejada, P. J., & Ustin, S. L. (2005). Simple reflectance indices track heat and water stress-induced changes in steady-state chlorophyll fluorescence at the canopy scale. Remote Sensing of Environment, 97(3), 403-414.
Gamon, J. A.; Peñuelas, J.; Field, C. B. A narrow-waveband spectral index that tracks diurnal changes in photosynthetic efficiency 1992 Remote Sensing of Environment
Gamon, J. A.; Surfus, J. S. Assessing leaf pigment content and activity with a reflectometer 1999 New Phytologist
Gitelson, A. A.; Kaufman, Y. J.; Stark, R.; Rundquist, D. Novel algorithms for remote estimation of vegetation fraction 2002 Remote Sensing of Environment
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Gitelson, Anatoly A.; Kaufman, Yoram J.; Merzlyak, Mark N. Use of a green channel in remote sensing of global vegetation from EOS-MODIS 1996 Remote Sensing of Environment
Gitelson, Anatoly A.; Keydan, Galina P.; Merzlyak, Mark N. Three-band model for noninvasive estimation of chlorophyll, carotenoids, and anthocyanin contents in higher plant leaves 2006 Geophys. Res. Lett.
Gitelson, Anatoly A.; Merzlyak, Mark N.; Zur, Y.; Stark, R.; Gritz, U. Non-destructive and remote sensing techniques for estimation of vegetation status 2001 Third European Conference on Precision Agriculture
Gitelson, Anatoly A.; Viña, Andrés; Arkebauer, Timothy J.; Rundquist, Donald C.; Keydan, Galina: Leavitt, Bryan Remote estimation of leaf area index and green leaf biomass in maize canopies 2003 Geophys. Res. Lett.
Goel, Narendra S.; Qin, Wenhan Influences of canopy architecture on relationships between various vegetation indices and LAI and Fpar: A computer simulation 1994 Remote Sensing Reviews
Guyot, G.; Baret, F.; Major, D. J. High spectral resolution: Determination of specral shifts between the red and the near infrared 1988 International Archives of Photogrammetry and Remote Sensing
Haboudane, Driss; Miller, John R.; Pattey, Elizabeth; Zarco-Tejada, Pablo J.; Strachan, Ian B. Hyperspectral vegetation indices and novel algorithms for predicting green LAI of crop canopies: Modeling and validation in the context of precision agriculture 2004 Remote Sensing of Environment
Haboudane, Driss; Miller, John R.; Tremblay, Nicolas; Zarco-Tejada, Pablo J.; Dextraze, Louise Integrated narrow-band vegetation indices for prediction of crop chlorophyll content for application to precision agriculture 2002 Remote Sensing of Environment
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Zarco-Tejada, Pablo J., Alberto Berjón, Raúl López-Lozano, John R. Miller, P. Martín, Victoria Cachorro, M. R. González, and A. De Frutos. "Assessing vineyard condition with hyperspectral indices: Leaf and canopy reflectance simulation in a row-structured discontinuous canopy." Remote Sensing of Environment 99, no. 3 (2005): 271-287.
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