Genomics

Whole genome resequencing is being carried out on ~400 sorghum accessions to understand the landscape of genetic variation in the selected germplasm and enable high-resolution mapping of bioenergy traits with genome wide association studies (GWAS). Additionally, ~200 sorghum recombinant inbred lines (RILs) will be characterized with ~400,000 genetic markers using genotyping-by-sequencing (Morris et al., 2013) for trait dissection in the RIL population and testcross hybrids of the RIL population.

Whole-genome resequencing

Experimental Design:

Genotyping-by-sequencing

Experimental Design:

Data Availability

CyVerse Data Commons

CoGe

CoGe has integrated the tools that make up the Danforth Center’s variant calling pipeline into their easy point and click GUI, allowing users to reproduce a majority of the TERRA SNP analysis. Below, we detail how to run sequence data through CoGe’s system.