TERRA-REF Documentation
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Primary version
Primary version
  • Introduction
  • Scientific Objectives
  • Experimental Design
    • The Maricopa Agricultural Center (MAC)
    • Controlled Environment Phenotyping
    • Genomics
  • Data
    • How to Access Data
    • Data Products
      • Environmental conditions
      • Phenotype Data
      • Genomics data
      • Fluorescence intensity imaging
      • Geospatial information
      • Hyperspectral imaging data
      • Infrared heat imaging data
      • Meteorological data
      • Point Cloud Data
      • Controlled Environment phenotype data
    • Data Use Policy
    • Manuscripts and Authorship Guidelines
  • Protocols
    • Field Scanner
    • Sensor Calibration
    • Hyperspectral Data
    • Controlled Environment Protocols
    • Manual Field Data Protocols
    • Phenotractor Protocols
    • UAV Protocols
    • Genomic Protocols
  • Technical Documentation
    • Software
    • Data Standards
      • Existing Data Standards
      • Agronomic and Phenotype Data Standards
      • Genomic Data Standards
      • Sensor Data Standards
      • Data Standards Committee
    • Data Product Levels
    • Directory Structure
    • Data Transfer
    • Data Processing Pipeline
    • Time Series Data in Geostreams
    • Data Backup
    • Systems Configuration
  • Code of Conduct
  • Appendix
    • Glossary
    • Accessing BETYdb with GIS Software
  • References
  • Archived Documentation
    • Developer Manual
      • Submitting data to Clowder
      • Submitting data to BETYdb
      • Submitting Data to CoGe
      • Developing Clowder Extractors
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  1. Data

Data Products

PreviousHow to Access DataNextEnvironmental conditions

Last updated 5 years ago

The following table lists available TERRA-REF data products. The table will be updated as new datasets are released. Links are provided to pages with detailed information about each data product including sensor descriptions, algorithm (extractor) information, protocols, and data access instructions.

Data product

Description

3D point cloud data (LAS) of the field constructed from the Fraunhofer 3D scanner output (PLY).

Fluorescence intensity imaging is collected using the PSII LemnaTec camera. Raw camera output is converted to (netCDF/GeoTIFF)

Hyperspectral imaging data from the SWIR and VNIR Headwall Inspector sensors are converted to netCDF output using the hyperspectral extractor.

Infrared heat imaging data is collected using FLIR sensor. Raw output is converted to GeoTIFF using the FLIR extractor.

Multispectral data is collected using the PRI and NDVI Skye sensors. Raw output is converted to timeseries data using the multispectral extractor.

Stereo imaging data is collected using the Prosilica cameras. Full-color images are reconstructed in GeoTIFF format using the de-mosaic extractor. A full-field mosaic is generated using the full-field mosaic extractor.

Spectral reflectance data

Spectral reflectance is measured using a Crop Circle active crop canopy sensor

Environment conditions are collected through the CO2 sensor and Thies Clima. Raw output is converted to netCFG using the environmental-logger extractor.

postGIS/netCDF

Phenotype data is derived from sensor output using the PlantCV extractor and imported into BETYdb.

FASTQ and VCF files available via Globus

UAV and Phenotractor

Plot level data available in BETYdb

See also

Sensor calibration
Fieldbooks and Protocols
Data standards
Geospatial information
3D point cloud data
Fluorescence intensity imaging
Hyperspectral imaging data
Infrared heat imaging data
Multispectral radiometer data
Stereo imaging data
Environmental conditions
Meteorological data
Phenotype data
Genomics data