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  • Introduction
  • Scientific Objectives
  • Experimental Design
    • The Maricopa Agricultural Center (MAC)
    • Controlled Environment Phenotyping
    • Genomics
  • Data
    • How to Access Data
    • Data Products
      • Environmental conditions
      • Phenotype Data
      • Genomics data
      • Fluorescence intensity imaging
      • Geospatial information
      • Hyperspectral imaging data
      • Infrared heat imaging data
      • Meteorological data
      • Point Cloud Data
      • Controlled Environment phenotype data
    • Data Use Policy
    • Manuscripts and Authorship Guidelines
  • Protocols
    • Field Scanner
    • Sensor Calibration
    • Hyperspectral Data
    • Controlled Environment Protocols
    • Manual Field Data Protocols
    • Phenotractor Protocols
    • UAV Protocols
    • Genomic Protocols
  • Technical Documentation
    • Software
    • Data Standards
      • Existing Data Standards
      • Agronomic and Phenotype Data Standards
      • Genomic Data Standards
      • Sensor Data Standards
      • Data Standards Committee
    • Data Product Levels
    • Directory Structure
    • Data Transfer
    • Data Processing Pipeline
    • Time Series Data in Geostreams
    • Data Backup
    • Systems Configuration
  • Code of Conduct
  • Appendix
    • Glossary
    • Accessing BETYdb with GIS Software
  • References
  • Archived Documentation
    • Developer Manual
      • Submitting data to Clowder
      • Submitting data to BETYdb
      • Submitting Data to CoGe
      • Developing Clowder Extractors
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  • Summary
  • Level 1 Data Access
  • Filesystem (Globus and Workbench)
  • Clowder
  • Level 3 Data
  • Raw data access
  • Known Issues
  • See also
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  1. Data
  2. Data Products

Infrared heat imaging data

PreviousHyperspectral imaging dataNextMeteorological data

Last updated 5 years ago

Summary

Infrared heat imaging data is collected collected using the FLIR SC615 thermal sensor. These data are provided as geotiff image raster files as well as plot level means.

  • Algorithms are in the repository; see the readme for details.

  • Sensor information:

Level 1 Data Access

Filesystem (Globus and Workbench)

  • ua-mac/Level_1/ir_geotiff

Clowder

To be created

Level 3 Data

Plot level summaries are named in the trait database. In the future this name will be used for the Level 1 data as well. This name from the Climate Forecast (CF) conventions, and is used instead of 'canopy_temperature' for two reasons: First, because we do not (currently) filter soil in this pipeline. Second, because the CF definition of surface_temperature distinguishes the surface from the medium: "The surface temperature is the temperature at the interface, not the bulk temperature of the medium above or below."

Raw data access

Thermal imaging data is available via Clowder and Globus:

/ua-mac/raw_data/flirIrCamera

Known Issues

  • Data are unavailable for Season 4 (summer 2017 sorghum) and season 5 (winter 2017-2018 wheat).

See also

For details about using this data via Clowder or Globus, please see section.

Work to recover these data is ongoing; see

Problem description

flir2tif directory of the Multispectral extractor
FLIR Thermal Camera collection
https://github.com/terraref/computing-pipeline/issues/391
'surface_temperature'
http://cfconventions.org/Data/cf-standard-names/48/build/cf-standard-name-table.html
Data Access
terraref/reference-data#190
terraref/reference-data#182
Geospatial information