TERRA-REF Documentation
WebsiteGitHubTutorials
Primary version
Primary version
  • Introduction
  • Scientific Objectives
  • Experimental Design
    • The Maricopa Agricultural Center (MAC)
    • Controlled Environment Phenotyping
    • Genomics
  • Data
    • How to Access Data
    • Data Products
      • Environmental conditions
      • Phenotype Data
      • Genomics data
      • Fluorescence intensity imaging
      • Geospatial information
      • Hyperspectral imaging data
      • Infrared heat imaging data
      • Meteorological data
      • Point Cloud Data
      • Controlled Environment phenotype data
    • Data Use Policy
    • Manuscripts and Authorship Guidelines
  • Protocols
    • Field Scanner
    • Sensor Calibration
    • Hyperspectral Data
    • Controlled Environment Protocols
    • Manual Field Data Protocols
    • Phenotractor Protocols
    • UAV Protocols
    • Genomic Protocols
  • Technical Documentation
    • Software
    • Data Standards
      • Existing Data Standards
      • Agronomic and Phenotype Data Standards
      • Genomic Data Standards
      • Sensor Data Standards
      • Data Standards Committee
    • Data Product Levels
    • Directory Structure
    • Data Transfer
    • Data Processing Pipeline
    • Time Series Data in Geostreams
    • Data Backup
    • Systems Configuration
  • Code of Conduct
  • Appendix
    • Glossary
    • Accessing BETYdb with GIS Software
  • References
  • Archived Documentation
    • Developer Manual
      • Submitting data to Clowder
      • Submitting data to BETYdb
      • Submitting Data to CoGe
      • Developing Clowder Extractors
Powered by GitBook
On this page
  • Abstract
  • Materials
  • Equipment
  • Procedures
  • Recipes
  • References
Export as PDF
  1. Protocols

Controlled Environment Protocols

Authors: Mockler Lab

Abstract

Automated VIS and NIR imaging in a controlled growth environment

Materials

  • ProMix BRK20 + 14-14-14 Osmocote pots

  • pre-filled by Hummert Sorghum seed

Equipment

  • Conviron Growth House

  • LemnaTec moving field conveyor belt system

  • Scanalyzer 3D platform

Procedures

Planting

  • Plant directly into phenotyping pots 

Chamber Conditions

Pre-growth (11 days) and Phenotying (11 days)

  • 14 hour photoperiod

  • 32oC day/22oC night temperature

  • 60% relative humidity

  • 700 umol/m2/s light

Watering Conditions

  • Prior to phenotyping, plants watered daily

  • The first night after loading, plants watered 1× by treatment group to 100% field capacity (fc)

  • Days 2 – 12, plants watered 2× daily by treatment group (100% or 30% FC) to target weight

Automation

  • Left shift lane rotation within each GH, during overnight watering jobs

  • VIS (TV and 2 x SV), NIR (TV and 2 x SV) imaging daily

Recipes

  • Field capacity = 200% GWC (200 g water/100 g soil), based upon extensive GWC testing done by Skyler Mitchell

  • Target weight (fc) = [(water weight at % fc) + [(average weight of carrier/saucer) + (dry soil weight) + (pot weight)]

  • Water weight at 100% fc = dry soil weight * (%GWC/100)

  • Water weight at 30% fc = water weight at 100% fc * 0.30

References

PreviousHyperspectral DataNextManual Field Data Protocols

Last updated 5 years ago