TERRA-REF Documentation
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  • Introduction
  • Data Sources
  • Software
  • Scientific Objectives and Experimental Design
    • Protocols
      • Controlled Environment Protocols
      • Manual Field Data Protocols
      • Phenotractor Protocols
      • Sensor Calibration
      • Template Protocol
      • UAV Protocols
    • Experimental Design
      • Experimental Design Danforth
        • Sorghum Lines Danforth
      • Experimental Design Genomics
        • Sorghum Lines Genomics Year 1
        • Sorghum Lines Genomics Year 1 (continued)
        • Sorghum Lines Genomics Year 2
      • Experimental Design MAC
  • User Manual
    • What Data is Available
    • Data Products
      • Environmental conditions
      • Fluorescence intensity imaging
      • Genomics data
      • Geospatial information
      • Hyperspectral imaging data
      • Infrared heat imaging data
      • Multispectral imaging data
      • Meteorological data
      • Phenotype data
      • Point Cloud Data
    • How to Access Data
      • Using Clowder (Sensor and Genoomics data)
      • Using Globus (Sensor and Genomics data)
      • Using BETYdb (trait data, experimental metadata)
        • Accessing BETYdb via ArcMap and other GIS software
      • Using CoGe (Genomics)
      • Using CyVerse (Genomics)
      • Using Analysis Workbench (all data)
    • Data Use Policy
    • Manuscripts and Authorship Guidelines
    • Release / reprocessing schedule
  • Technical Documentation
    • Data Standards
      • Existing Data Standards
      • Agronomic and Phenotype Data Standards
      • Genomic Data Standards
      • Sensor Data Standards
      • Data Standards Committee
    • Directory Structure
    • Data Storage
    • Data Transfer
    • Data Processing Pipeline
      • Geospatial Time Series Structure
    • Data Backup
    • Data Collection
    • Data Product Creation
      • Genomic Data
      • Hyperspectral Data
    • Quality Assurance and Quality Control
    • Systems Configuration
  • Developer Manual
    • Submitting data to Clowder
    • Submitting data to BETYdb
    • Submitting Data to CoGe
    • Developing Clowder Extractors
  • Tutorials
  • Appendix
    • Code of Conduct
    • Collaboration Tools
    • Glossary
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On this page
  • Season 1 soghum (April - July 2016)
  • Automated Phenotpying
  • Manually Collected Field Data
  • Season 2 soghum (August - November 2016)
  • Automated Phenotpying
  • Manually Collected Field Data
  • Durum wheat
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  1. Scientific Objectives and Experimental Design
  2. Experimental Design

Experimental Design MAC

PreviousSorghum Lines Genomics Year 2NextUser Manual

Last updated 7 years ago

Season 1 sorghum (April - July 2016) Season 2 sorghum (August - November 2016) Durum wheat (January 2017 -

Season 1 soghum (April - July 2016)

.

Planting maps

Planting Design

Under scanner system

Experiment

Reps

Treatments

Experimental design

BAP

3

30 lines (12 PS, 12 sweet, 6 grain)

RCB with sorghum types nested in groups

Night illumination

3

5 illumination levels x 2 PS lines (with check line separating illumination levels)

RCB

Row #

3

6 adjacent plot scenarios: 3 lines (forage, sweet, PS) x 2 sides (east or west)

RCB but not balanced with all treatments in all reps

Biomass

3

5 sampling times x 3 lines (forage, sweet, PS)

RCB with sampling time as a repeated measure

Density

3

3 densities (5, 15, 30 cm) x 3 lines (forage, sweet, PS)

RCB

RILs

3

130 RILs plus 10 repeats of a single line/rep

Incomplete Block (row-column alpha lattice design)

Uniformity

17

2 lines (forage, PS)

None - Same line planted in single range

West of scanner system

Experiment

Reps

Treatments

Experimental design

BAP

1

30 lines (12 PS, 12 sweet, 6 grain)

None - single rep planted for observation

RILs

3

60 RILs

Incomplete Block (row-column alpha lattice design)

Automated Phenotpying

Manually Collected Field Data

emergence vigor emergence final stand counts plant heights node and tiller counts on marked plants phenology growth stage data leaf desiccation ratings radiation interception managements Incomplete harvest yield data

Season 2 soghum (August - November 2016)

Planting map

Planting Design

Under scanner system - same as season 1

Automated Phenotpying

same as season 1

Manually Collected Field Data

plant heights managements emergence vigor emergence final stand counts node and tiller counts on marked plants leaf length and width on marked plants, one date

Durum wheat

The is the largest field crop analytics robot in the world. This high-throughput phenotyping field-scanning robot has a 30-ton steel gantry that autonomously moves along two 200-meter steel rails while continuously imaging the crops growing below it with a diverse array of .

Twelve sensors are attached to the gantry system. Detailed information for each sensor including name, variable measured, and field of view are . The planned sensor missions and their objectives for 2016 are .

.

Three hundred thirty one lines were planted in Season 1
Under the scanner system
West the scanner system
Lemnatec Scanalyzer Field Gantry System
cameras and sensors
available here
available here
One hundred and seventy-six lines were planted in Season 2
Under the scanner system
Experimental design
Automatically and manually collected field data plan