Last updated
Last updated
supports the genomics pipeline required for the TERRA program for Sorghum sequence alignment and analysis. It has a web interface and REST API. CoGe is developed by Eric Lyons and hosted at the University of Arizona, where it is made available for researchers to use. CoGe can be hosted on any server, VM, or Docker container.
Upload files to Cyverse data store. The TERRARef project has a 2TB allocation
Use icommands to transfer to data store
project directory: /iplant/home/shared/terraref
Raw data goes in subdirectory raw_data/
, which is only writable for those sending raw reads.
(CoGe output) can go into output/
Transferring data from Roger to iplant data store