TERRA-REF Documentation
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  • Introduction
  • Data Sources
  • Software
  • Scientific Objectives and Experimental Design
    • Protocols
      • Controlled Environment Protocols
      • Manual Field Data Protocols
      • Phenotractor Protocols
      • Sensor Calibration
      • Template Protocol
      • UAV Protocols
    • Experimental Design
      • Experimental Design Danforth
        • Sorghum Lines Danforth
      • Experimental Design Genomics
        • Sorghum Lines Genomics Year 1
        • Sorghum Lines Genomics Year 1 (continued)
        • Sorghum Lines Genomics Year 2
      • Experimental Design MAC
  • User Manual
    • What Data is Available
    • Data Products
      • Environmental conditions
      • Fluorescence intensity imaging
      • Genomics data
      • Geospatial information
      • Hyperspectral imaging data
      • Infrared heat imaging data
      • Multispectral imaging data
      • Meteorological data
      • Phenotype data
      • Point Cloud Data
    • How to Access Data
      • Using Clowder (Sensor and Genoomics data)
      • Using Globus (Sensor and Genomics data)
      • Using BETYdb (trait data, experimental metadata)
        • Accessing BETYdb via ArcMap and other GIS software
      • Using CoGe (Genomics)
      • Using CyVerse (Genomics)
      • Using Analysis Workbench (all data)
    • Data Use Policy
    • Manuscripts and Authorship Guidelines
    • Release / reprocessing schedule
  • Technical Documentation
    • Data Standards
      • Existing Data Standards
      • Agronomic and Phenotype Data Standards
      • Genomic Data Standards
      • Sensor Data Standards
      • Data Standards Committee
    • Directory Structure
    • Data Storage
    • Data Transfer
    • Data Processing Pipeline
      • Geospatial Time Series Structure
    • Data Backup
    • Data Collection
    • Data Product Creation
      • Genomic Data
      • Hyperspectral Data
    • Quality Assurance and Quality Control
    • Systems Configuration
  • Developer Manual
    • Submitting data to Clowder
    • Submitting data to BETYdb
    • Submitting Data to CoGe
    • Developing Clowder Extractors
  • Tutorials
  • Appendix
    • Code of Conduct
    • Collaboration Tools
    • Glossary
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  1. User Manual

Data Products

PreviousWhat Data is AvailableNextEnvironmental conditions

Last updated 7 years ago

The following table lists available TERRA-REF data products. The table will be updated as new datasets are released. Links are provided to pages with detailed information about each data product including sensor descriptions, algorithm (extractor) information, protocols, and data access instructions.

Data product

Description

3D point cloud data (LAS) of the field constructed from the Fraunhofer 3D scanner output (PLY).

Fluorescence intensity imaging is collected using the PSII LemnaTec camera. Raw camera output is converted to (netCDF/GeoTIFF)

Hyperspectral imaging data from the SWIR and VNIR Headwall Inspector sensors are converted to netCDF output using the hyperspectral extractor.

Infrared heat imaging data is collected using FLIR sensor. Raw output is converted to GeoTIFF using the FLIR extractor.

Multispectral data is collected using the PRI and NDVI Skye sensors. Raw output is converted to timeseries data using the multispectral extractor.

Stereo imaging data is collected using the Prosilica cameras. Full-color images are reconstructed in GeoTIFF format using the de-mosaic extractor. A full-field mosaic is generated using the full-field mosaic extractor.

Spectral reflectance data

Spectral reflectance is measured using a Crop Circle active crop canopy sensor

Environment conditions are collected through the CO2 sensor and Thies Clima. Raw output is converted to netCFG using the environmental-logger extractor.

postGIS/netCDF

Phenotype data is derived from sensor output using the PlantCV extractor and imported into BETYdb.

FASTQ and VCF files available via Globus

UAV and Phenotractor

Plot level data available in BETYdb

See also

  • ?

What data is available
Sensor calibration
Fieldbooks and Protocols
Data standards
Geospatial information
3D point cloud data
Fluorescence intensity imaging
Hyperspectral imaging data
Infrared heat imaging data
Multispectral radiometer data
Stereo imaging data
Environmental conditions
Meteorological data
Phenotype data
Genomics data