1 of 4

Experimental Design Genomics

Genomic data includes whole-genome resequencing data from the HudsonAlpha Institute for Biotechnology, Alabama for 384 samples for accessions from the sorghum Bioenergy Association Panel (BAP) and genotyping-by-sequencing (GBS) data from Kansas State University for 768 samples from a population of sorghum recombinant inbred lines (RIL).

Whole-genome resequencing

Experimental Design:

384 BAP samples were sequenced to an average depth of ~25x.
Shotgun sequencing (127-bp paired-end) was done using an Illumina X10 instrument at the HudsonAlpha Institute for Biotechnology.
Variant calling was done using a computational pipeline at the Danforth Center.
See the Data Products page to get access to raw and derived data products.

Genotyping-by-sequencing

Experimental Design:

768 RIL samples were sequenced using a GBS approach.

Sorghum Lines Genomics Year 1

see https://gist.github.com/dlebauer/6b7b0e181cc5ae5034b992f725712ba4#file-sorghum-lines-genomics-md

Sorghum Lines Genomics Year 1 (continued)

Sorghum Lines Genomics Year 2

Experimental Design Genomics

Whole-genome resequencing

Experimental Design:

384 BAP samples were sequenced to an average depth of ~25x.
Shotgun sequencing (127-bp paired-end) was done using an Illumina X10 instrument at the HudsonAlpha Institute for Biotechnology.
Variant calling was done using a computational pipeline at the Danforth Center.
See the Data Products page to get access to raw and derived data products.

Genotyping-by-sequencing

Experimental Design:

768 RIL samples were sequenced using a GBS approach.