TERRA-REF Documentation
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  • Introduction
  • Data Sources
  • Software
  • Scientific Objectives and Experimental Design
    • Protocols
      • Controlled Environment Protocols
      • Manual Field Data Protocols
      • Phenotractor Protocols
      • Sensor Calibration
      • Template Protocol
      • UAV Protocols
    • Experimental Design
      • Experimental Design Danforth
        • Sorghum Lines Danforth
      • Experimental Design Genomics
        • Sorghum Lines Genomics Year 1
        • Sorghum Lines Genomics Year 1 (continued)
        • Sorghum Lines Genomics Year 2
      • Experimental Design MAC
  • User Manual
    • What Data is Available
    • Data Products
      • Environmental conditions
      • Fluorescence intensity imaging
      • Genomics data
      • Geospatial information
      • Hyperspectral imaging data
      • Infrared heat imaging data
      • Multispectral imaging data
      • Meteorological data
      • Controlled Environment phenotype data
      • Point Cloud Data
    • How to Access Data
      • Using Clowder (Sensor and Genoomics data)
      • Using Globus (Sensor and Genomics data)
      • Using BETYdb (trait data, experimental metadata)
        • Accessing BETYdb via ArcMap and other GIS software
      • Using CoGe (Genomics)
      • Using CyVerse (Genomics)
      • Using Analysis Workbench (all data)
    • Data Use Policy
    • Manuscripts and Authorship Guidelines
    • Release / reprocessing schedule
  • Technical Documentation
    • Data Standards
      • Existing Data Standards
      • Agronomic and Phenotype Data Standards
      • Genomic Data Standards
      • Sensor Data Standards
      • Data Standards Committee
    • Directory Structure
    • Data Storage
    • Data Transfer
    • Data Processing Pipeline
      • Geospatial Time Series Structure
    • Data Backup
    • Data Collection
    • Data Product Creation
      • Genomic Data
      • Hyperspectral Data
    • Quality Assurance and Quality Control
  • Developer Manual
    • Submitting data to Clowder
    • Submitting data to BETYdb
    • Submitting Data to CoGe
    • Developing Clowder Extractors
  • Tutorials
  • Appendix
    • Code of Conduct
    • Collaboration Tools
    • Glossary
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  • Overview
  • What data is available?
  • Audience
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User Manual

PreviousExperimental Design MACNextWhat Data is Available

Last updated 5 years ago

Overview

This user manual is divided into the following sections:

  • : A summary of the available data products and the processes used to create them

  • : Instructions for how to access the data products using Clowder, Globus, BETYdb, and CoGe

  • Description of the

  • : Information about data use and attribution

  • : In-depth examples of how to access and use the TERRA-REF data

What data is available?

  • Raw output from sensors deployed on Lemnatec field and greenhouse systems, UAVs and tractors

  • Manually-collected fieldbooks and associated protocols

  • Derived data, including phenomics data, from computational approaches

  • Genomic pipeline data

Audience

The TERRA-REF reference dataset may be of interest to a variety of research communities including:

  • Computer vision\/remote sensing\/image analysis (raw sensor data and metadata)

  • Physiologists (plants and how they are growing)

  • Robotics (gantry\/location\/orientation)

  • Breeders (derived traits)

  • Genomics\/bioinformaticians (genomics data)

Data Products
Data Access
scientific objectives and experimental design
Data use policy
User Tutorials