TERRA-REF Documentation
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  • Introduction
  • Data Sources
  • Software
  • Scientific Objectives and Experimental Design
    • Protocols
      • Controlled Environment Protocols
      • Manual Field Data Protocols
      • Phenotractor Protocols
      • Sensor Calibration
      • Template Protocol
      • UAV Protocols
    • Experimental Design
      • Experimental Design Danforth
        • Sorghum Lines Danforth
      • Experimental Design Genomics
        • Sorghum Lines Genomics Year 1
        • Sorghum Lines Genomics Year 1 (continued)
        • Sorghum Lines Genomics Year 2
      • Experimental Design MAC
  • User Manual
    • What Data is Available
    • Data Products
      • Environmental conditions
      • Fluorescence intensity imaging
      • Genomics data
      • Geospatial information
      • Hyperspectral imaging data
      • Infrared heat imaging data
      • Multispectral imaging data
      • Meteorological data
      • Controlled Environment phenotype data
      • Point Cloud Data
    • How to Access Data
      • Using Clowder (Sensor and Genoomics data)
      • Using Globus (Sensor and Genomics data)
      • Using BETYdb (trait data, experimental metadata)
        • Accessing BETYdb via ArcMap and other GIS software
      • Using CoGe (Genomics)
      • Using CyVerse (Genomics)
      • Using Analysis Workbench (all data)
    • Data Use Policy
    • Manuscripts and Authorship Guidelines
    • Release / reprocessing schedule
  • Technical Documentation
    • Data Standards
      • Existing Data Standards
      • Agronomic and Phenotype Data Standards
      • Genomic Data Standards
      • Sensor Data Standards
      • Data Standards Committee
    • Directory Structure
    • Data Storage
    • Data Transfer
    • Data Processing Pipeline
      • Geospatial Time Series Structure
    • Data Backup
    • Data Collection
    • Data Product Creation
      • Genomic Data
      • Hyperspectral Data
    • Quality Assurance and Quality Control
  • Developer Manual
    • Submitting data to Clowder
    • Submitting data to BETYdb
    • Submitting Data to CoGe
    • Developing Clowder Extractors
  • Tutorials
  • Appendix
    • Code of Conduct
    • Collaboration Tools
    • Glossary
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  • Overview
  • Core Communication Tools
  • GitHub
  • TERRA Ref sites on Github:
  • Using Github:
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  1. Appendix

Collaboration Tools

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Last updated 5 years ago

For use by the TERRA Reference Phenotyping Standards Committee.

Overview

All of the web-based software below provides the ability to organize projects hierarchically, facilitate sharing, and support collaboration. Much of this is publicly viewable.

Core Communication Tools

  • project management, website content and hosting, collaborative software development

  • Google Drive collaborative editing of documents that we create (notes, manuscripts, etc)

  • ()

GitHub

TERRA Ref sites on Github:

  • Data products repository

    • issues and milestones:

  • Computational Pipeline Repository

    • issues and milestones:

  • Website for R&D :

  • Documentation

    • GitHub Repository:

    • Edit in the or (see )

Using Github:

  • Features

    • Interface to 'git', a specialized command-line tool for version control.

      • participants can reply to issues via email, similar to an email discussion list

:

Issue tracking and discussion forum

Github github.com/terraref
Slack: terra-ref.slack.com
signup
https://github.com/terraref/reference-data
https://github.com/terraref/reference-data/issues
https://github.com/terraref/computational-pipeline
https://github.com/terraref/computational-pipeline/issues
https://terraref.ncsa.illinois.edu
https://terraref.ncsa.illinois.edu
GitBook Desktop Editor
GitBook Web interface
GitBook Documentation
code management / collaboration
https://guides.github.com/features/issues/
GitHub Documentation
GitHub Desktop